CXR-LT 2026

ISBI challenge on long-tailed, multi-label, and zero-shot classification on chest X-rays

Location: Excel London, London E16 1XL, United Kingdom
Time: TBD

Click here to participate in Task 1: https://www.codabench.org/competitions/11470/
Click here to participate in Task 2: https://www.codabench.org/competitions/11471/

Overview

Chest radiography, like many diagnostic medical exams, produces a long-tailed distribution of clinical findings; while a small subset of diseases is routinely observed, the vast majority of diseases are relatively rare [1]. This poses a challenge for standard deep learning methods, which exhibit bias toward the most common classes at the expense of the important but rare "tail" classes [2]. Many existing methods [3] have been proposed to tackle this specific type of imbalance, though only recently has attention been given to long-tailed medical image recognition problems [4-6]. Diagnosis on chest X-rays (CXRs) is also a multi-label problem, as patients often present with multiple disease findings simultaneously; however, only a select few studies incorporate knowledge of label co-occurrence into the learning process [7-9, 12]. Since most large-scale image classification benchmarks contain single-label images with a mostly balanced distribution of labels, many standard deep learning methods fail to accommodate the class imbalance and co-occurrence problems posed by the long-tailed, multi-label nature of tasks like disease diagnosis on CXRs [2].

The first event, CXR-LT 2023 [13], aimed to achieve these goals by providing high-quality benchmark CXR data for model development and conducting comprehensive evaluations to identify ongoing issues impacting lung disease classification performance. Building on the success of CXR-LT 2023, the CXR-LT 2024 [14] expands the dataset to 377,110 chest X-rays (CXRs) and 45 disease labels, including 19 new rare disease findings. It also introduces a new focus on zero-shot learning to address limitations identified in the previous event.

For this year's version of CXR-LT 2026, we continue and extend the CXR-LT benchmark with two restructured tasks focused on long-tailed multi-label classification of chest X-rays. These tasks are directly motivated by real-world diagnostic scenarios, where disease distributions are highly imbalanced, and ground truth labels may vary in quality and coverage. By addressing these challenges, CXR-LT 2026 encourages the development of methods can better handle data imbalance and label uncertainty in clinical practice.


Shared Task

Dataset

This challenge is based on a curated set of over 160,000 chest X-ray images selected from the PadChest[15], supplemented with PadChest-GR[16], where radiologists provided manual annotations. We curated a final set of 36 long-tailed classes, which span a broad range of chest findings and serve as the prediction targets for this year’s classification task.

Task

Given a CXR, our challenge includes two tasks, to be held as independent tasks:

For all tasks, participants will be provided with a large, automatically labeled training set of >160,000 CXR images with 30/6 binary disease labels. While last year's CXR-LT was a success, we hope that CXR-LT 2026 can provide even further meaningful methodological advances toward clinically realistic multi-label, long-tailed, and zero-shot disease classification on CXR.

Access to Images

This competition uses all images from PADCHEST. By successfully registering for this competition, you have demonstrated that you have proper access to this dataset. Now you may follow the instructions at https://bimcv.cipf.es/bimcv-projects/padchest/ to download the dataset.

Access to Labels

Unlike the original set of PADCHEST labels, this competition includes labels for 36 disease findings. You can access and download the labelset using this link : https://github.com/CXR-LT/CXR-LT-2026. When uncompressed, it contains:

Evaluation

For each task, models will be evaluated on the provided testing set using “macro-averaged” mean Average Precision (mAP).There will be two phases of the competition:

Online Evaluation

The competition will be conducted through the CodaLab platform.

Awards

This challenge is hosted in conjunction with the ISBI 2026 challenge. For each task, the top three teams will be invited to submit their work to the ISBI 2026 challenge track proceedings, receive an official certificate, and present their methods in an oral session at the ISBI 2026 CXR-LT Challenge in London. After the conference, we will prepare a summary paper to be submitted to a top medical imaging journal (e.g., MedIA, TMI). A selected group of top-performing teams from each task (final number to be announced) will be invited to contribute and describe their methods in this journal publication, similar to our previous challenge report [12].


To Participate

This competition uses data from PADCHEST [15].

To participate in this competition, you must follow these steps:

Rules

If you have completed these steps correctly, you will be admitted to the competition and we will provide links to download the necessary data by email! You are not permitted to share these labels whatsoever.


Important dates

Nov 24, 2025    Training data released and challenge (development phase) begins

Dec 01, 2025    Test labels released and final evaluation (testing phase) begins

Jan 27, 2026    Testing phase ends and competition is closed.

Feb 10, 2026    Top-performing teams invited to present at ISBI 2026

Apr 10, 2026    ISBI 2026 CXR-LT Challenge event


Tentative Schedule

TBD

Steering committee

George Shih
Weill Cornell Medicine
Adam E. Flanders
Thomas Jefferson Univ.
Zhiyong Lu
NIH/NLM
Ronald M. Summers
NIH Clinical Center

Organizers

Hexin Dong
Weill Cornell Medicine
Yi Lin
Weill Cornell Medicine
Pengyu Zhou
PUMC
Yuzhe Yang
UCLA
Mingquan Lin
University of Minnesota
Hao Chen
HKUST
Yifan Peng
Weill Cornell Medicine

References

  1. Zhou SK, Greenspan H, Davatzikos C, Duncan JS, Van Ginneken B, Madabhushi A, Prince JL, Rueckert D, Summers RM. A review of deep learning in medical imaging: Imaging traits, technology trends, case studies with progress highlights, and future promises. Proceedings of the IEEE. 2021 Feb 26;109(5):820-38.
  2. Holste G, Wang S, Jiang Z, Shen TC, Shih G, Summers RM, Peng Y, Wang Z. Long-Tailed Classification of Thorax Diseases on Chest X-Ray: A New Benchmark Study. In Data Augmentation, Labelling, and Imperfections: Second MICCAI Workshop, DALI 2022, Held in Conjunction with MICCAI 2022, Singapore, September 22, 2022, Proceedings 2022 Sep 16 (pp. 22-32). Cham: Springer Nature Switzerland.
  3. Zhang Y, Kang B, Hooi B, Yan S, Feng J. Deep long-tailed learning: A survey. IEEE Transactions on Pattern Analysis and Machine Intelligence. 2023 Apr 19.
  4. Zhang R, Haihong E, Yuan L, He J, Zhang H, Zhang S, Wang Y, Song M, Wang L. MBNM: multi-branch network based on memory features for long-tailed medical image recognition. Computer Methods and Programs in Biomedicine. 2021 Nov 1;212:106448.
  5. Ju L, Wang X, Wang L, Liu T, Zhao X, Drummond T, Mahapatra D, Ge Z. Relational subsets knowledge distillation for long-tailed retinal diseases recognition. In Medical Image Computing and Computer Assisted Intervention-MICCAI 2021: 24th International Conference, Strasbourg, France, September 27-October 1, 2021, Proceedings, Part VIII 24 2021 (pp. 3-12). Springer International Publishing.
  6. Yang Z, Pan J, Yang Y, Shi X, Zhou HY, Zhang Z, Bian C. ProCo: Prototype-Aware Contrastive Learning for Long-Tailed Medical Image Classification. In Medical Image Computing and Computer Assisted Intervention-MICCAI 2022: 25th International Conference, Singapore, September 18-22, 2022, Proceedings, Part VIII 2022 Sep 16 (pp. 173-182). Cham: Springer Nature Switzerland.
  7. Chen H, Miao S, Xu D, Hager GD, Harrison AP. Deep hierarchical multi-label classification of chest X-ray images. In International Conference on Medical Imaging with Deep Learning 2019 May 24 (pp. 109-120). PMLR.
  8. Wang G, Wang P, Cong J, Liu K, Wei B. BB-GCN: A Bi-modal Bridged Graph Convolutional Network for Multi-label Chest X-Ray Recognition. arXiv preprint arXiv:2302.11082. 2023 Feb 22.
  9. Chen B, Li J, Lu G, Yu H, Zhang D. Label co-occurrence learning with graph convolutional networks for multi-label chest x-ray image classification. IEEE Journal of Biomedical and Health Informatics. 2020 Jan 16;24(8):2292-302.
  10. Johnson AE, Pollard TJ, Greenbaum NR, Lungren MP, Deng CY, Peng Y, Lu Z, Mark RG, Berkowitz SJ, Horng S. MIMIC-CXR-JPG, a large publicly available database of labeled chest radiographs. arXiv preprint arXiv:1901.07042. 2019 Jan 21.
  11. PhysioNet. MIMIC-CXR-JPG - chest radiographs with structured labels [Internet]. Available from: https://physionet.org/content/mimic-cxr-jpg/2.0.0/.
  12. Moukheiber D, Mahindre S, Moukheiber L, Moukheiber M, Wang S, Ma C, Shih G, Peng Y, Gao M. Few-Shot Learning Geometric Ensemble for Multi-label Classification of Chest X-Rays. In Data Augmentation, Labelling, and Imperfections: Second MICCAI Workshop, DALI 2022, Held in Conjunction with MICCAI 2022, Singapore, September 22, 2022, Proceedings 2022 Sep 16 (pp. 112-122). Cham: Springer Nature Switzerland.
  13. CodaLab. CXR-LT: Multi-Label Long-Tailed Classification on Chest X-Rays [Internet]. Available from: https://codalab.lisn.upsaclay.fr/competitions/12599.
  14. Lin M, Holste G, Wang S, Zhou Y, Wei Y, Banerjee I, Chen P, Dai T, Du Y, Dvornek NC, Ge Y, Guo Z, Hanaoka S, Kim D, Messina P, Lu Y, Parra D, Son D, Soto Á, Urooj A, Vidal R, Yamagishi Y, Yan P, Yang Z, Zhang R, Zhou Y, Celi LA, Summers RM, Lu Z, Chen H, Flanders A, Shih G, Wang Z, Peng Y. CXR-LT 2024: A MICCAI challenge on long-tailed, multi-label, and zero-shot disease classification from chest X-ray. Med Image Anal. 2025 Dec;106:103739.
  15. Bustos, A., Pertusa, A., Salinas, J. M., & De La Iglesia-Vaya, M. (2020). Padchest: A large chest x-ray image dataset with multi-label annotated reports. Medical image analysis, 66, 101797.
  16. de Castro, D. C., Bustos, A., Bannur, S., Hyland, S. L., Bouzid, K., Wetscherek, M. T., ... & Pertusa, A. (2025). Padchest-gr: A bilingual chest X-ray dataset for grounded radiology report generation. NEJM AI, 2(7), AIdbp2401120.

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